PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477615.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 466aa    MW: 52722.8 Da    PI: 6.4428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.4e-10417464347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W++ E++ l  +v+++G+g+W+ I +t       Rt+ ++k++w++ 
   XP_016477615.1 417 KWSALEEDTLRTGVQKYGSGNWTHILNTYRdifVVRTAGDLKDKWRNM 464
                      8********************************88***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.956410466IPR017930Myb domain
SuperFamilySSF466891.4E-13412465IPR009057Homeodomain-like
SMARTSM007170.0037414466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-11416465IPR009057Homeodomain-like
CDDcd116602.72E-16417465No hitNo description
PfamPF002495.9E-8417464IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDIDISRWIL EFILRQPLDD SILNALVHTL PLPNDNLNLK KALILRKLES EISNSSVTEK  60
ILELLELFEE LDHQEGIETL KEMKSAYCAV AVECTVKFLN QKGAESDKGK YFEAVKRIWK  120
KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVEVFVREAK  180
ERIGPPFLDV VAETYRSDDA VREFFGGVNE QGTCRNSVRE VRKGNALPRQ KHVAFRRTRG  240
ASAGTCGGVR ISDSIELGLD ASGGQDSFLP TPEIEKAQEA LKLSSKELRA MVKDPLPDAL  300
QFAETLSSLV RDHMGHQPAE NNSDRAPHPV VASSRMDQAN GENCEANCHP SAASKPDLMN  360
RKSAAHTSER DESADELNEG SPSGVRRFTL PSPKRTEISP LKKYEFKKFT TRRKPTKWSA  420
LEEDTLRTGV QKYGSGNWTH ILNTYRDIFV VRTAGDLKDK WRNMMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772851.10.0PREDICTED: uncharacterized protein LOC104223173
RefseqXP_016477615.10.0PREDICTED: uncharacterized protein LOC107799057
TrEMBLA0A0V0IEV80.0A0A0V0IEV8_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000781280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-14MYB_related family protein